Nephelae scientific python virtual environment

python logoWe provide on Nephelae a complete set of useful python packages to handle and analyse scientific data. It includes publically available packages widely available in the community (numpy, scipy, etc...) as well as a set of packages implemented by Ifremer or in the frame of our projects. Feel free to request any package that may be missing and we will add it.

Loading the python environment

To load the virtual environment, once you are connected, type in in your console :

source /home/cercache/tools/environments/scientific_toolbox_cloudphys_precise/bin/activate.csh

 

Use the "which python" command to check that you are using the correct version. You should get the following output :

    br156-XXX:~% which python
    /home/cercache/tools/environments/scientific_toolbox_cloudphys_precise/bin/python
 
    br156-XXX:~% python
    Python 2.7.3 (default, Sep 19 2012, 15:56:55)
    [GCC 4.6.3] on linux2
    Type "help", "copyright", "credits" or "license" for more information.
    >>> 

Currently available packages

Bottleneck==0.6.0
Cython==0.19.2
Django==1.4.3
Flask==0.10.1
GDAL==1.9.1
Jinja2==2.7
MarkupSafe==0.18
MySQL-python==1.2.3
OSR==0.0.1
Pillow==1.7.7
PyXML==0.8.4
Pygments==1.6
Quadtree==0.1.2
SQLAlchemy==0.9.2
Shapely==1.2.18
South==0.7.6
Sphinx==1.2b1
Tempita==0.5.1
WebOb==1.2.3
ZSI==2.1-a1
amqp==1.4.2
amqplib==1.0.2
anyjson==0.3.3
basemap==1.0.7
billiard==3.3.0.14
celery==3.1.8
cerbere==0.0.1dev
cerbere-utils==0.1.0
cersat-graphs==0.1
configobj==4.7.2
ctypedbytes==0.1.8
cx-Oracle==5.1.1
decorator==3.3.3
distribute==0.6.26
docutils==0.10
dulwich==0.9.0
eyeD3==0.7.1
guppy==0.1.10
h5py==2.3.0b1
happybase==0.8
httpauth==0.2
humanize==0.5
klaus==0.3
kombu==3.0.10
librabbitmq==1.0.1
line-profiler==1.0b3
logilab-astng==0.24.3
logilab-common==0.59.1
lxml==2.3.4
matplotlib==1.1.0
memory-profiler==0.17
msgpack-python==0.4.2
netCDF3==0.9.3
netCDF4==1.0.4
numpy==1.7.1
pandas==0.11.0
psutil==0.6.1
pyglet==1.1.4
pygrib==1.9.6
pyhdf==0.8.3
pykdtree==0.1
pylint==0.28.0
pyproj==1.9.0
pyresample==1.1.0
python-dateutil==2.1
pytz==2013.9
requests==1.2.0
routr==0.7.1
scipy==0.12.0
simplejson==3.0.7
simplekml==1.2.3
six==1.3.0
sqlalchemy-migrate==0.7.2
thrift==0.9.1
typedbytes==0.3.8
udunits==1.0
virtualenv==1.10.1
wsgiref==0.1.2