We provide on Nephelae a complete set of useful python packages to handle and analyse scientific data. It includes publically available packages widely available in the community (numpy, scipy, etc...) as well as a set of packages implemented by Ifremer or in the frame of our projects. Feel free to request any package that may be missing and we will add it.Loading the python environment
To load the virtual environment, once you are connected, type in in your console :
source /home/cercache/tools/environments/scientific_toolbox_cloudphys_precise/bin/activate.csh
Use the "which python" command to check that you are using the correct version. You should get the following output :
br156-XXX:~% which python
/home/cercache/tools/environments/scientific_toolbox_cloudphys_precise/bin/python
br156-XXX:~% python
Python 2.7.3 (default, Sep 19 2012, 15:56:55)
[GCC 4.6.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>>
Currently available packages
Bottleneck==0.6.0 Cython==0.19.2 Django==1.4.3 Flask==0.10.1 GDAL==1.9.1 Jinja2==2.7 MarkupSafe==0.18 MySQL-python==1.2.3 OSR==0.0.1 Pillow==1.7.7 PyXML==0.8.4 Pygments==1.6 Quadtree==0.1.2 SQLAlchemy==0.9.2 Shapely==1.2.18 South==0.7.6 Sphinx==1.2b1 Tempita==0.5.1 WebOb==1.2.3 ZSI==2.1-a1 amqp==1.4.2 amqplib==1.0.2 anyjson==0.3.3 basemap==1.0.7 billiard==3.3.0.14 celery==3.1.8 cerbere==0.0.1dev cerbere-utils==0.1.0 cersat-graphs==0.1 configobj==4.7.2 ctypedbytes==0.1.8 cx-Oracle==5.1.1 decorator==3.3.3 distribute==0.6.26 docutils==0.10 dulwich==0.9.0 eyeD3==0.7.1 guppy==0.1.10 h5py==2.3.0b1 happybase==0.8 httpauth==0.2 humanize==0.5 klaus==0.3 kombu==3.0.10 librabbitmq==1.0.1 line-profiler==1.0b3 logilab-astng==0.24.3 logilab-common==0.59.1 lxml==2.3.4 matplotlib==1.1.0 memory-profiler==0.17 msgpack-python==0.4.2 netCDF3==0.9.3 netCDF4==1.0.4 numpy==1.7.1 pandas==0.11.0 psutil==0.6.1 pyglet==1.1.4 pygrib==1.9.6 pyhdf==0.8.3 pykdtree==0.1 pylint==0.28.0 pyproj==1.9.0 pyresample==1.1.0 python-dateutil==2.1 pytz==2013.9 requests==1.2.0 routr==0.7.1 scipy==0.12.0 simplejson==3.0.7 simplekml==1.2.3 six==1.3.0 sqlalchemy-migrate==0.7.2 thrift==0.9.1 typedbytes==0.3.8 udunits==1.0 virtualenv==1.10.1 wsgiref==0.1.2